What are the automatic changes conducted by the tool during WIPO ST.25 import?
| ST.25 numeric identifier | Transformation performed by the tool |
160 | Discard element 160 (number of SEQ ID numbers) |
2.
170 | Discard element 170 (Software used) |
3.
210 | Element 210: set sequence identifier |
(SEQ ID) | |
n.a. | Set sequence name. |
5.
211 | Set sequence length |
to value of <211> | |
212 | Replace molecule type (i) 'ADN' with 'DNA', (ii) 'ARN' with |
'RNA' | |
212 | Replace molecule type 'PRT' with 'AA |
' |
8.
213 | Replace ‘Artificial Sequence’ and specified equivalents (see UC12, step 5) with ‘synthetic construct’ |
213 | Replace FR and DE translations of ‘Artificial Sequence’ and specified equivalents (see UC12, step 5) with ‘synthetic construct’ |
213 | Replace ‘Unknown’ and specified equivalents (see UC12, step 5) with ‘unidentified’ |
213 | Replace FR and DE translations of ‘Unknown’ and specified equivalents(see UC12, step 5) with ‘unidentified’ |
221 | Replace obsolete feature key with recommended key (Scenario 8, ST.26, Annex VII) |
221 | Replace custom feature key with recommended key (Scenario 12, ST.26, Annex VII) |
221 | Replace VARSPLIC key with VAR_SEQ (Scenario 13, ST.26, Annex VII) |
221 | Skip transformation of feature key if 1) |
molecule type is PRT and 2) feature key is NOT valid ST.26 and 3) the tool can’t determine whether the location is a single position or a range |
of positions | |
222 | Clean feature location value provided (i.e., remove parentheses, replace invalid separator, reduce redundant ranges |
) |
17.
222 (negative value) | If negative numbering in PRT sequence, the feature location need to be corrected (see Scenario 16, ST.26, Annex VII) |
. |
222 |
(missing) | Provide a warning that feature location is missing |
in import report OR does it provide a feature location of 1..sequence length? | |
223 | Import value of 223 after replacing the obsolete feature key with recommended key (Scenario 8, ST.26, Annex VII) |
223 | Import value of 223 after replacing custom feature key with recommended key (Scenario 12, ST.26, Annex VII) |
. |
223 | Import 223 after replacing VARSPLIC key with VAR_SEQ (Scenario 13, ST.26, Annex VII) |
. |
300-313 | Discard publication information |
provided | |
400 | Replace ‘u’ with ‘t’ in RNA sequence |
. |
400 | Replace ‘u’ with ‘t’ in DNA sequence |
. |
400 | Replace amino acid symbols in 3-letter code with 1-letter code |
. |
400 |
Provide a warning that the annotation of Xaa symbols must be reviewed |
27.
in import report |
400 |
Set skipped indicator to ‘yes’ |
for those with a 400 value of 000 |
n.a. |
Create mandatory source/SOURCE feature for each sequence that: 1) is NOT intentionally skipped and 2) does NOT already have a source feature |
. |
n.a. | Set value of qualifier /mol_type for ‘synthetic construct’ and protein sequences |
n.a. | Notify the user to set the value of qualifier /mol_type |
. |
n.a. | Notify the user to set/review the value of the mandatory qualifier |