| Status | ||||||
|---|---|---|---|---|---|---|
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Key Changes at a Glance
🚀 New Features
- Inclusion of a new database — legacy projects will be copied across to the new database — on installation
- OSX signing Feature name — short explanation
- Inclusion of WIPO Sequence Validator - WIPO Sequence now includes WIPO Sequence Validator inside it!
⚙️ Improvements
- Extended bulk edit functionalities resulting in less repetitive actions when annotating your sequences
- Enhanced [functionality]navigation within a project, including a new 'jump to' functionality
- Extended warnings, including for short sequences and for the use of 1-letter codes when defining amino acids
🐞 Bug Fixes
- Fixed issue causing [symptom]red banners to appear
- Resolved error in [module]errors in the Import Report
Detailed Changes
Improvements
| Key | Description |
|---|---|
| ST26T-3054 | Automatic addition of mandatory qualifiers to feature keys once they are created |
| St26T-3056 | Extension of the bulk edit functionality to bulk add multiple copies of the same feature to a single SEQ ID |
| ST26T-3053 | Extension of the bulk edit functionality to a bulk “unskip” a range of SEQ IDs |
| ST26T-3496 | Improvement of the bulk edit functionality to allow the feature location to be left blank |
| ST26T-3331/ST26T-3510 | Provision of a warning message in the verification report which details sequences which do not meet the minimum length requirement and which will not appear in the sequence listing |
| ST26T-3479 | Provision of a "jump to" a particular SEQ ID, located near the page navigation at the bottom of the sequence summary table |
| ST26T-3461 | Bulk import of multiple FASTA sequences located in a single file |
Provision of a tool-tip which indicates 1-letter codes must be used and is always visible when the residues are being edited | |
| ST26T-2938 | A validation status being set for each sequence. This means that if a sequence is not edited, then it will not be checked again |
| ST26T-2443 | Sorting of feature locations, after the 'source' feature in accordance with the INSDC requirements: the source feature should always remain on the top and the other features are ordered by location walking the strand from 5' to 3' (likewise for AA) |
| ST26T-2987/ST26T-3086/ST26T-2957 | Certain verification rules regarding sequences are now grouped together into a single message in the verification report. For instance, rules regarding the use of lowercase for nucleotide sequences and uppercase for amino acid sequences. |
Bugs
| Key | Description |
|---|---|
| ST26T-2873 | TAB character is not detected in InventionTitle, ApplicantName, InventorName, ApplicantNameLatin, InventorNameLatin during validation process |
| ST26T-2900 | Event Viewer errors when launching WIPO Sequence |
| ST26T-2902 | In a project, the PDF resulting form clicking the Print button contains a wrong priority date and filing date (it reduces the day by 1) |
| ST26T-2946 | Instances where SEQ ID assigned after import is not consecutive |
| ST26T-2851 | Language Dependent Qualifiers page cannot be loaded when project contains more than ~12.700 language dependent qualifiers |
| ST26T-3003 | 'Frequency' not being treated as a language dependent free text qualifier |
| ST26T-2993 | Wrong verification rule applied for circular_RNA qualifier |
| ST26T-2972 | No error thrown when DOCTYPE declaration include random characters at the end |
| ST26T-2895 | When pop-up for new person or organization appears, selecting 'no' can freeze the tool |
| ST26T-3052 | Verification rule for invalid translation qualifier value not always triggering |
| ST26T-3067 | Bulk Edit only affects the first 20 sequences of a range |
| ST26T-3089 | Cannot bulk delete more than 20 sequences at once |
| ST26T-3462 | Certificate issue in Mac OSX (Error message "WIPO Sequence" cannot be opened because the developer cannot be verified") |
| ST26T-3564 | Priority date decreased by one day when importing projects created in one time zone, into a WIPO Sequence instance located in another time zone |
| ST26T-3542 | Error after installing WIPO Sequence Tool in unsupported Mac Version - uncaught exception |
| ST26T-3545 | No warning regarding the 1-letter code for amino acid being expected - tool tips should indicate that only amino acid symbols in one letter code are expected |
Important Notes
List here all breaking changes, known issues and limitations
Known issues, both those resolved and existing, are available on the Knowledge Base at: Known Issues and trouble-shooting Workarounds are provided for the majority of known issues.
Upgrade/Installation Notes
Include details regarding compatibility with different platformsIn order to upgrade to version 3.1.2, when you open WIPO Sequence you will see an auto-update pop-up box. Please agree to continue with the upgrade and WIPO Sequence will
💡 For detailed instructions, refer to:
[User Guide / Installation Manual]
...
https://www.wipo.int/en/web/standards/sequence/user-manual
Experiencing Issues?
Contact us at WIPO by emailing wiposequence@wipo.int